STRINGSTRING
Phatr29887 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr29887" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr29887Predicted protein (564 aa)    
Predicted Functional Partners:
Phatr16599
Predicted protein; Involved in the catabolism of quinolinic acid (QA) (294 aa)
     
  0.953
Phatr15948
Predicted protein (262 aa)
       
  0.913
Phatr13606
Predicted protein (338 aa)
         
  0.902
Phatr45509
Predicted protein (723 aa)
   
  0.843
ACL
Atp-citrate synthase (1082 aa)
     
 
  0.689
Phatr49545
Predicted protein (300 aa)
   
 
  0.678
Phatr18103
Predicted protein (214 aa)
   
 
  0.678
Phatr48350
Predicted protein (1773 aa)
   
 
  0.671
Phatr54969
Aliphatic amidase (357 aa)
   
 
  0.669
Phatr45451
Formamidase (342 aa)
   
 
  0.669
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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