STRINGSTRING
Phatr29958 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr29958" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr29958Predicted protein (251 aa)    
Predicted Functional Partners:
Phatr11145
Predicted protein (325 aa)
     
  0.995
Phatr10029
Predicted protein (109 aa)
     
  0.978
Phatr47737
Predicted protein (361 aa)
     
  0.760
Phatr9806
Predicted protein (195 aa)
     
  0.698
Phatr26061
Predicted protein (552 aa)
     
  0.695
Phatr13360
Predicted protein (226 aa)
     
  0.620
Phatr23164
Predicted protein (489 aa)
     
    0.610
Phatr45989
Predicted protein (1008 aa)
     
  0.588
Phatr14572
Predicted protein (219 aa)
     
  0.574
Phatr8270
Predicted protein (84 aa)
     
  0.570
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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