STRINGSTRING
Phatr29983 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr29983" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr29983Predicted protein (524 aa)    
Predicted Functional Partners:
Phatr9386
Predicted protein (337 aa)
       
      0.913
Phatr12107
Predicted protein (460 aa)
   
   
  0.681
Phatr12740
Predicted protein (459 aa)
     
 
  0.656
ACC2
Biotin carboxylase (2282 aa)
         
  0.655
Phatr49253
Predicted protein (566 aa)
   
 
  0.606
Phatrdraft561
Methionine aminopeptidase (363 aa)
         
  0.533
Phatr29217
Predicted protein (406 aa)
         
  0.533
Phatr24514
Methionine aminopeptidase (326 aa)
         
  0.533
Phatr17304
Methionine aminopeptidase; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val) (429 aa)
         
  0.533
Phatr12595
Methionine aminopeptidase (357 aa)
         
  0.533
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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