STRINGSTRING
Phatr30461 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr30461" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr30461Predicted protein (463 aa)    
Predicted Functional Partners:
Phatr14208
Predicted protein (249 aa)
      
  0.974
Phatr1971
Predicted protein (492 aa)
          
    0.900
Phatr10852
Predicted protein (167 aa)
      
 
  0.767
Phatr31339
Predicted protein (482 aa)
      
 
  0.757
Phatr48864
Reductase with NAD or NADP as acceptor (395 aa)
      
 
  0.750
Phatr43981
Predicted protein (418 aa)
      
 
  0.691
Phatr33530
Predicted protein (392 aa)
      
 
  0.691
TMT
Tocopherol o-methyltransferase (318 aa)
      
 
  0.691
Phatr10824
Predicted protein (304 aa)
      
 
  0.691
Phatr6940
Predicted protein (129 aa)
      
 
  0.568
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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