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Phatr30502 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr30502" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr30502Predicted protein (197 aa)    
Predicted Functional Partners:
GltX
Ferredoxin-dependent glutamate synthase, fusion of large and small subunits (1591 aa)
   
 
  0.964
Phatr24739
Predicted protein (1594 aa)
   
 
  0.964
TPI/GapC3
Triosephosphate isomerase/glyceraldehyde-3-phosphate dehydrogenase (614 aa)
     
 
  0.888
Phatr50084
Predicted protein (260 aa)
   
  0.866
Phatr14785
Predicted protein (176 aa)
   
  0.866
Phatr14192
Predicted protein (311 aa)
   
 
  0.826
ACL
Atp-citrate synthase (1082 aa)
   
 
  0.769
Phatr48393
Predicted protein (654 aa)
   
  0.754
Phatr45428
Predicted protein (675 aa)
   
  0.754
pDLDH1
Lipoamide dehydrogenase (543 aa)
   
  0.754
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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