STRINGSTRING
PYC1 protein (Phaeodactylum tricornutum) - STRING interaction network
"PYC1" - Precursor of carboxylase pyruvate carboxylase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PYC1Precursor of carboxylase pyruvate carboxylase (1252 aa)    
Predicted Functional Partners:
ACL
Atp-citrate synthase (1082 aa)
   
  0.968
PK6
Pyruvate kinase (553 aa)
     
  0.953
PK3
Pyruvate kinase (543 aa)
     
  0.953
PK2
Pyruvate kinase (513 aa)
     
  0.953
PK5
Pyruvate kinase (543 aa)
     
  0.953
Phatr30145
Citrate synthase (471 aa)
   
  0.951
MDH
Predicted protein (324 aa)
   
  0.935
ME1
Malic enzyme (560 aa)
   
  0.934
Phatr51970
Malic enzyme (555 aa)
   
  0.934
PEPCase_2
Predicted protein (877 aa)
       
  0.924
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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