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Phatr30572 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr30572" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr30572Predicted protein (462 aa)    
Predicted Functional Partners:
Phatr41418
Predicted protein (339 aa)
         
    0.900
CPS-II
Predicted protein (1542 aa)
   
 
  0.856
Phatr24195
CPS III, carbamoyl-phosphate synthase mitochindrial (1463 aa)
   
 
  0.856
Phatr52174
DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1143 aa)
   
   
  0.754
Phatr13581
DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1165 aa)
   
   
  0.754
Phatr50885
Predicted protein (602 aa)
     
   
  0.712
Phatr19761
Predicted protein (702 aa)
     
   
  0.712
PheRS
Phenylalanyl-trna synthetase class IIc family protein (405 aa)
   
   
  0.702
Phatr2394
Predicted protein (373 aa)
 
   
  0.672
Phatr26346
Predicted protein (647 aa)
 
   
  0.669
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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