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Phatr30670 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr30670" - 40S ribosomal protein S21 in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr3067040S ribosomal protein S21 (85 aa)    
Predicted Functional Partners:
Phatr23748
Predicted protein (67 aa)
     
  0.999
Phatr21073
Predicted protein (110 aa)
     
  0.999
Phatr31073
Predicted protein (188 aa)
     
  0.999
Phatr18559
40S ribosomal protein S6 (245 aa)
     
  0.999
Phatr28147
Predicted protein (62 aa)
     
  0.999
Phatr30160
Predicted protein (104 aa)
     
  0.999
Phatr17519
Predicted protein (143 aa)
     
  0.999
rps19
Predicted protein (147 aa)
     
  0.999
Phatr17545
Predicted protein (261 aa)
     
  0.999
Phatr28562
Predicted protein (166 aa)
     
  0.999
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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