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Phatr30898 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr30898" - Vacuolar protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr30898Vacuolar protein (429 aa)    
Predicted Functional Partners:
Phatr31375
Predicted protein (168 aa)
     
  0.982
Phatr38130
Predicted protein (199 aa)
     
  0.977
Phatr49220
Predicted protein (217 aa)
       
  0.976
Phatr47496
Predicted protein (359 aa)
     
  0.976
Phatr18620
Predicted protein (222 aa)
     
  0.964
Phatr6433
Predicted protein (143 aa)
     
  0.962
Phatr5904
Predicted protein (206 aa)
     
  0.962
Phatr11901
Predicted protein (168 aa)
     
  0.913
Phatr11271
Predicted protein (167 aa)
     
 
  0.872
Phatr19669
Predicted protein (202 aa)
     
  0.827
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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