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XPF protein (Phaeodactylum tricornutum) - STRING interaction network
"XPF" - Excision repair cross-complementing rodent repair deficiency, complementation group 4 in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XPFExcision repair cross-complementing rodent repair deficiency, complementation group 4 (975 aa)    
Predicted Functional Partners:
Phatr13221
Predicted protein (208 aa)
     
  0.984
Rad22
Predicted protein (468 aa)
       
  0.845
Phatr54612
Ercc4-like protein (736 aa)
     
  0.834
Phatr9529
Predicted protein (348 aa)
     
  0.811
Phatr47369
Predicted protein (1496 aa)
     
  0.811
PHATR_2089
Predicted protein (449 aa)
     
  0.811
Phatr18280
Predicted protein (504 aa)
     
  0.811
Phatr14845
Predicted protein (440 aa)
     
  0.811
Phatr26750
Ubiquitin carrier protein (153 aa)
       
  0.784
PCNA
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (260 aa)
       
  0.782
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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