STRINGSTRING
Phatr31068 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr31068" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr31068Predicted protein (353 aa)    
Predicted Functional Partners:
Phatr20034
Predicted protein (306 aa)
   
 
0.964
Phatr13119
Predicted protein (270 aa)
   
 
  0.942
Phatr12963
Predicted protein (270 aa)
   
 
  0.942
RNAP-II_3
Predicted protein (181 aa)
     
      0.860
Phatr19835
Predicted protein (208 aa)
     
      0.641
Phatr10148
Predicted protein (129 aa)
     
      0.627
Phatr19568
Predicted protein (485 aa)
   
 
  0.580
Phatr16875
Predicted protein (164 aa)
     
      0.577
Phatr50825
Predicted protein (451 aa)
   
 
  0.560
Phatr13566
Predicted protein (320 aa)
     
      0.536
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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