• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Phatr3131 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr3131" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr3131Predicted protein (271 aa)    
Predicted Functional Partners:
Phatr26176
Predicted protein (408 aa)
   
 
  0.636
Phatr31919
Predicted protein (305 aa)
     
   
  0.468
Phatr42307
Predicted protein (453 aa)
     
        0.454
rpl2
Predicted protein (257 aa)
   
   
  0.414
Phatr31718
Inosine-5’-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5’-phosphate (IMP) to xanthosine 5’-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth (468 aa)
   
   
  0.405
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
Server load: low (7%) [HD]