STRINGSTRING
Phatr3145 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr3145" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr3145Predicted protein (324 aa)    
Predicted Functional Partners:
Phatr22955
Predicted protein (311 aa)
         
  0.933
Phatr10005
Predicted protein (212 aa)
     
 
  0.619
Phatr10089
Predicted protein (141 aa)
     
 
  0.617
Phatr8876
Predicted protein (167 aa)
       
 
  0.447
Phatr48302
Predicted protein (549 aa)
       
 
  0.447
Phatr12589
Predicted protein (213 aa)
       
 
  0.447
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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