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SSDH protein (Phaeodactylum tricornutum) - STRING interaction network
"SSDH" - Succinate semialdehyde dehydrogenase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SSDHSuccinate semialdehyde dehydrogenase (471 aa)    
Predicted Functional Partners:
FAO1
Peroxisomal bifunctional enzyme (767 aa)
   
  0.770
Phatr35240
Predicted protein (684 aa)
 
  0.770
NRPS
Non ribosomal peptide synthase (1367 aa)
   
 
  0.760
Phatr8945
Aminotransferase (412 aa)
   
  0.736
Phatr52110
Putative uncharacterized protein (427 aa)
   
  0.736
Phatr41686
Predicted protein (430 aa)
   
  0.736
Phatr17427
Predicted protein (695 aa)
   
  0.700
Phatr19659
Iron-containing dehydrogenase (465 aa)
 
 
  0.681
ACL
Atp-citrate synthase (1082 aa)
   
 
  0.653
GDCP
Glycine decarboxylase p-protein (1005 aa)
   
  0.639
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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