STRINGSTRING
Phatr31725 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr31725" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr31725Predicted protein (629 aa)    
Predicted Functional Partners:
Phatr6258
Predicted protein (205 aa)
     
  0.995
Phatr13820
Predicted protein (282 aa)
     
  0.975
Phatr9929
Predicted protein (196 aa)
     
  0.968
Phatr30019
Predicted protein (299 aa)
     
  0.940
Phatr12679
Predicted protein (290 aa)
     
 
  0.880
Phatr45441
Predicted protein; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly (379 aa)
     
  0.853
Phatr51007
Predicted protein (296 aa)
     
 
  0.853
PHATR_1682
Anthranilate synthase. anthranilate synthetase. chorismate lyase (439 aa)
     
 
  0.852
Phatr25666
Predicted protein (885 aa)
     
 
  0.850
Phatr50246
Predicted protein (823 aa)
     
 
  0.837
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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