STRINGSTRING
Phatr31778 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr31778" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr31778Predicted protein (361 aa)    
Predicted Functional Partners:
Phatr44603
Predicted protein (220 aa)
     
      0.493
Phatr49652
Predicted protein (842 aa)
     
 
  0.429
Phatr46565
Predicted protein (1545 aa)
     
 
  0.429
Phatr46562
Predicted protein (1545 aa)
     
 
  0.429
Phatr3061
Predicted protein (356 aa)
     
 
  0.429
Phatr13331
Predicted protein (347 aa)
     
 
  0.429
Phatr52174
DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1143 aa)
         
  0.408
Phatr13581
DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1165 aa)
         
  0.408
secA
Protein translocase subunit secA (935 aa)
         
  0.408
Phatr44531
Protein-L-isoaspartate O-methyltransferase (299 aa)
         
  0.407
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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