STRINGSTRING
Phatr31816 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr31816" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr31816Predicted protein (554 aa)    
Predicted Functional Partners:
Phatr10479
Predicted protein (300 aa)
     
0.804
Phatrdraft998
Predicted protein (230 aa)
       
  0.587
PtRabX1
Predicted protein (230 aa)
       
  0.587
RabX2
Predicted protein (229 aa)
       
  0.587
Sec4
Predicted protein (207 aa)
       
  0.587
Phatr2527
Predicted protein (333 aa)
     
  0.567
Rab11
Predicted protein (214 aa)
     
  0.444
APC6
Predicted protein (381 aa)
     
   
  0.402
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
Server load: low (8%) [HD]