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  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Phatr31975 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr31975" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr31975Predicted protein (397 aa)    
Predicted Functional Partners:
Phatr5236
Predicted protein (271 aa)
     
   
  0.913
Phatr5702
Predicted protein (227 aa)
           
  0.910
Phatr8694
Predicted protein (63 aa)
           
  0.904
Phatr20589
Predicted protein (434 aa)
     
   
  0.898
Phatr42932
Predicted protein (1193 aa)
       
 
  0.864
Phatr35766
Predicted protein (828 aa)
       
 
  0.806
Phatr17967
Putative tRNA (cytidine(32)/guanosine(34)-2’-O)-methyltransferase; Methylates the 2’-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs (315 aa)
     
   
  0.798
HSP40C
Chaperone, dnaj-like protein (397 aa)
           
  0.550
Phatr33394
Predicted protein (175 aa)
           
  0.410
Phatr43579
Predicted protein (701 aa)
     
   
  0.400
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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