STRINGSTRING
Phatr32290 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr32290" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr32290Predicted protein (684 aa)    
Predicted Functional Partners:
Phatr42753
Predicted protein (1678 aa)
     
  0.857
Phatr50624
Putative uncharacterized protein (603 aa)
       
  0.840
Phatr47826
Predicted protein (777 aa)
     
  0.788
Phatr12234
GABAR1 G protein-coupled GABA receptor (421 aa)
     
  0.788
Phatr45697
Predicted protein (1067 aa)
     
  0.776
Phatr8451
Predicted protein (76 aa)
     
  0.764
MRE11
Predicted protein (550 aa)
     
  0.758
Phatr15508
Predicted protein (461 aa)
     
  0.669
Phatr28743
Predicted protein (203 aa)
     
 
  0.661
Phatr51005
DNA ligase (651 aa)
 
  0.622
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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