STRINGSTRING
Phatr32803 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr32803" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr32803Predicted protein (800 aa)    
Predicted Functional Partners:
Phatr9033
Predicted protein (268 aa)
       
 
  0.637
Sec61alpha
Transport protein Sec61 alpha subunit (472 aa)
     
  0.595
Phatr27039
Predicted protein (634 aa)
       
    0.579
Phatr24474
Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH (264 aa)
     
      0.531
sUbi
Ubiquitin-like protein (268 aa)
       
 
  0.525
hUbi
Predicted proteinUbiquitin extension protein 4 (381 aa)
       
 
  0.525
Phatr49037
Predicted protein (205 aa)
       
 
  0.525
UBI3
Ubiquitin extension protein 3 (155 aa)
       
 
  0.514
Phatr19341
Predicted protein (199 aa)
       
      0.501
Phatrdraft611
Predicted protein (130 aa)
     
      0.458
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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