STRINGSTRING
Phatr32823 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr32823" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr32823Predicted protein (222 aa)    
Predicted Functional Partners:
Phatr4402
Predicted protein (274 aa)
     
  0.958
Phatr28181
Predicted protein (365 aa)
     
  0.602
Phatr23623
Predicted protein (300 aa)
     
  0.602
Phatr8717
Serine hydroxymethyltransferase; Interconversion of serine and glycine (464 aa)
     
  0.600
SHMT2
Serine hydroxymethyltransferase; Interconversion of serine and glycine (501 aa)
     
  0.600
SHMT
Serine hydroxymethyltransferase; Interconversion of serine and glycine (473 aa)
     
  0.600
FTHFS
Fomate-tetrahydrofolate ligase (666 aa)
     
  0.562
P5CS
Delta l-pyrroline-5-carboxylate synthetase (747 aa)
              0.526
Phatr18027
Predicted protein (706 aa)
              0.526
PheRS
Phenylalanyl-trna synthetase class IIc family protein (405 aa)
         
  0.504
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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