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Phatr32830 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr32830" - Ribonuclease in Phaeodactylum tricornutum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr32830Ribonuclease; Endonuclease that specifically degrades the RNA of RNA- DNA hybrids (393 aa)    
Predicted Functional Partners:
Phatr1690
Predicted protein (495 aa)
   
   
  0.867
Phatr54992
DNA primase (458 aa)
   
   
  0.701
PheRS
Phenylalanyl-trna synthetase class IIc family protein (405 aa)
   
   
  0.693
MCM7
Predicted protein (618 aa)
   
   
  0.690
RFC3
Predicted protein (361 aa)
   
 
  0.684
MCM5
Predicted protein (667 aa)
   
   
  0.676
MCM3
Predicted protein (551 aa)
   
   
  0.664
PCNA
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (260 aa)
     
 
  0.663
PHATR_7646
Predicted protein (137 aa)
   
        0.658
PK2
Pyruvate kinase (513 aa)
         
  0.653
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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