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STRINGSTRING
Phatr3295 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr3295" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr3295Predicted protein (156 aa)    
Predicted Functional Partners:
MAT1
Predicted protein (294 aa)
     
 
  0.857
Phatr48763
Predicted protein (436 aa)
     
 
  0.852
ERCC2
Xeroderma pigmentosum group D complementing protein (782 aa)
     
 
  0.832
Phatr43960
Predicted protein (641 aa)
     
 
  0.831
Phatr20574
Predicted protein (720 aa)
     
 
  0.827
Phatr44108
Predicted protein (358 aa)
     
 
  0.817
Phatr13675
Predicted protein; Belongs to the protein kinase superfamily (228 aa)
   
 
  0.776
Phatr15555
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1706 aa)
     
 
  0.723
CYCL1
Predicted protein; Belongs to the cyclin family (193 aa)
     
 
  0.706
TFIIH-p44
Suppressor of stem-loop protein 1 (413 aa)
     
 
  0.649
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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