STRINGSTRING
Phatr3296 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr3296" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr3296Predicted protein (380 aa)    
Predicted Functional Partners:
Phatr46071
Predicted protein (180 aa)
   
        0.526
Phatr37858
Predicted protein (398 aa)
   
          0.525
Phatr11883
Predicted protein (357 aa)
   
          0.521
Phatrdraft1025
Tocopherol cyclase (515 aa)
   
          0.516
Phatr21970
Predicted protein (495 aa)
   
          0.515
Phatr6402
Predicted protein (170 aa)
   
          0.512
Phatr2738
Predicted protein (235 aa)
   
          0.510
Phatr16471
Predicted protein (207 aa)
   
        0.503
Phatr36377
Predicted protein (413 aa)
   
        0.491
Phatr40135
Predicted protein (461 aa)
   
        0.489
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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