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STRINGSTRING
Phatr33072 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr33072" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr33072Predicted protein (872 aa)    
Predicted Functional Partners:
Phatr27039
Predicted protein (634 aa)
   
 
  0.942
Phatr47896
Predicted protein (1543 aa)
     
 
  0.932
Phatr37291
Predicted protein (248 aa)
     
 
  0.792
Phatr24748
Protein pelota homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non-functional ribosomes and degrade damaged mRNAs (413 aa)
     
 
  0.784
Phatr15121
Predicted protein (450 aa)
     
 
  0.774
Phatr16766
Predicted protein (140 aa)
     
 
  0.762
Phatr12921
Predicted protein (240 aa)
     
 
  0.747
Phatr15233
Predicted protein (151 aa)
     
 
  0.741
Phatr16560
Predicted protein (269 aa)
     
 
  0.733
RRP
Ribosomal RNA processing protein (354 aa)
     
 
  0.733
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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