STRINGSTRING
Phatr33295 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr33295" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr33295Predicted protein (1186 aa)    
Predicted Functional Partners:
Phatr52450
Predicted protein (154 aa)
       
  0.985
H3-1a
Histone H3 (136 aa)
       
 
  0.758
Phatr50695
Histone H3 (136 aa)
       
 
  0.758
H3.3
Histone H3 (136 aa)
       
 
  0.758
Phatr16843
Histone H3 (104 aa)
       
 
  0.758
Phatr11841
Histone H3 (136 aa)
       
 
  0.758
Phatr51604
Predicted protein (509 aa)
     
  0.671
Phatr47011
Predicted protein (1431 aa)
     
  0.671
NURF-140
Imitation switch isoform 1, alias nucleosome remodeling factor 140 kDa subunit (1023 aa)
     
  0.671
Phatr231
Predicted protein (970 aa)
     
  0.671
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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