STRINGSTRING
Phatr33325 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr33325" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr33325Predicted protein (249 aa)    
Predicted Functional Partners:
Phatr45285
Predicted protein (595 aa)
       
      0.811
Phatr42978
Predicted protein (632 aa)
     
        0.518
Phatr42836
Predicted protein (347 aa)
     
        0.497
Phatr32786
Predicted protein (660 aa)
     
        0.497
Phatr45580
Coronin like protein (450 aa)
     
        0.489
UPL1
Ubiquitin-protein ligase 1 (166 aa)
     
   
  0.447
Phatr37086
Predicted protein (226 aa)
     
   
  0.404
Phatr33864
Predicted protein (465 aa)
     
   
  0.404
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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