STRINGSTRING
Phatr33540 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr33540" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr33540Predicted protein (155 aa)    
Predicted Functional Partners:
Phatr20716
Predicted protein (138 aa)
     
  0.998
Phatr25743
Predicted protein (414 aa)
     
  0.978
Phatr25184
Predicted protein (623 aa)
     
  0.978
helicase_5
Predicted protein (428 aa)
     
  0.853
Phatr41785
Predicted protein (370 aa)
     
  0.841
Phatrdraft920
Predicted protein (575 aa)
     
  0.772
Phatr47365
Predicted protein (603 aa)
     
  0.772
Phatr39714
Predicted protein (531 aa)
     
  0.772
Phatr27821
Predicted protein (822 aa)
     
  0.772
Phatr17862
Predicted protein (529 aa)
     
  0.772
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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