STRINGSTRING
Phatr3362 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr3362" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr3362Predicted protein (322 aa)    
Predicted Functional Partners:
Phatr55177
Spermine/spermidine synthase (299 aa)
     
 
  0.960
Phatrdraft913
S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP (386 aa)
         
  0.906
Phatr7913
Predicted protein (76 aa)
     
 
  0.619
Phatr7910
Predicted protein (70 aa)
     
 
  0.619
Phatr51460
Annotation not available (348 aa)
     
 
  0.619
Phatr13386
Spermine/spermidine synthase (275 aa)
     
 
  0.619
Phatr11608
Predicted protein (76 aa)
     
 
  0.619
Phatr21369
Predicted protein (308 aa)
       
 
  0.540
Phatr10458
Predicted protein (171 aa)
       
      0.540
Phatr31147
Predicted protein; Catalyzes the dehydration of methylthioribulose-1- phosphate (MTRu-1-P) into 2,3-diketo-5-methylthiopentyl-1- phosphate (DK-MTP-1-P) (559 aa)
   
     
  0.534
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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