Phatr33622 protein (Phaeodactylum tricornutum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Phatr33622

Predicted protein (295 aa)

Predicted Functional Partners:

Phatr16786

0.696

Phatr55230

0.682

HSP90

0.682

Phatr18793

0.682

HSP70A

0.671

HSP70B

0.671

Hsp70_2

0.671

Phatr23164

0.645

HSP70G

0.643

hCDK1

0.642

Your Current Organism:

Phaeodactylum tricornutum

NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HSP70A	HSP70G	Phatr54019	Phatr55122	Protein heat shock protein Hsp70	Protein heat shock protein	0.925
HSP70A	HSP90	Phatr54019	Phatr55215	Protein heat shock protein Hsp70	Heat shock protein Hsp90	0.882
HSP70A	Phatr16786	Phatr54019	Phatr16786	Protein heat shock protein Hsp70	Predicted protein	0.862
HSP70A	Phatr18793	Phatr54019	Phatr18793	Protein heat shock protein Hsp70	Predicted protein	0.882
HSP70A	Phatr23164	Phatr54019	Phatr23164	Protein heat shock protein Hsp70	Predicted protein	0.884
HSP70A	Phatr33622	Phatr54019	Phatr33622	Protein heat shock protein Hsp70	Predicted protein	0.671
HSP70A	Phatr55230	Phatr54019	Phatr55230	Protein heat shock protein Hsp70	Predicted protein	0.882
HSP70B	HSP70G	Phatr46333	Phatr55122	Protein heat shock protein	Protein heat shock protein	0.954
HSP70B	HSP90	Phatr46333	Phatr55215	Protein heat shock protein	Heat shock protein Hsp90	0.922
HSP70B	Phatr16786	Phatr46333	Phatr16786	Protein heat shock protein	Predicted protein	0.862
HSP70B	Phatr18793	Phatr46333	Phatr18793	Protein heat shock protein	Predicted protein	0.882
HSP70B	Phatr23164	Phatr46333	Phatr23164	Protein heat shock protein	Predicted protein	0.884
HSP70B	Phatr33622	Phatr46333	Phatr33622	Protein heat shock protein	Predicted protein	0.671
HSP70B	Phatr55230	Phatr46333	Phatr55230	Protein heat shock protein	Predicted protein	0.882
HSP70G	HSP70A	Phatr55122	Phatr54019	Protein heat shock protein	Protein heat shock protein Hsp70	0.925
HSP70G	HSP70B	Phatr55122	Phatr46333	Protein heat shock protein	Protein heat shock protein	0.954
HSP70G	HSP90	Phatr55122	Phatr55215	Protein heat shock protein	Heat shock protein Hsp90	0.843
HSP70G	Hsp70_2	Phatr55122	Phatr21519	Protein heat shock protein	Predicted protein	0.926
HSP70G	Phatr16786	Phatr55122	Phatr16786	Protein heat shock protein	Predicted protein	0.992
HSP70G	Phatr18793	Phatr55122	Phatr18793	Protein heat shock protein	Predicted protein	0.843

page 1 of 5

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2018

Credits

Access

Info

About