STRINGSTRING
Phatr3366 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr3366" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr3366Predicted protein (225 aa)    
Predicted Functional Partners:
SLY1
Predicted protein (648 aa)
     
  0.898
SNAP
Predicted protein (313 aa)
     
  0.867
SybD
Predicted protein (274 aa)
     
  0.823
SybA
Predicted protein (226 aa)
 
 
  0.823
Phatr9033
Predicted protein (268 aa)
     
  0.819
hNpl4
Predicted protein (473 aa)
     
  0.783
Phatr45122
Predicted protein (421 aa)
   
0.780
UNC18
Predicted protein (588 aa)
     
  0.760
Phatr28219
Predicted protein (447 aa)
   
0.760
sUfd1
Predicted protein (191 aa)
     
  0.759
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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