STRINGSTRING
Phatr34120 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr34120" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr34120Predicted protein (254 aa)    
Predicted Functional Partners:
Phatr44651
Predicted protein (281 aa)
     
    0.817
TPI/GapC3
Triosephosphate isomerase/glyceraldehyde-3-phosphate dehydrogenase (614 aa)
       
  0.754
Phatr45308
Ribokinase (709 aa)
   
 
  0.671
Phatr10546
Predicted protein (302 aa)
   
 
  0.671
Phatr51242
Predicted protein (342 aa)
       
  0.667
Phatr20547
Homeobox protein (646 aa)
       
  0.667
Phatr52138
Annotation not available (490 aa)
   
   
  0.450
Phatr30040
Glucose-6-phosphate 1-dehydrogenase; Catalyzes the rate-limiting step of the oxidative pentose-phosphate pathway, which represents a route for the dissimilation of carbohydrates besides glycolysis (477 aa)
   
   
  0.450
Phatr8691
Predicted protein (193 aa)
   
   
  0.446
Phatr38631
6-phosphogluconolactonase (278 aa)
   
   
  0.446
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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