STRINGSTRING
Phatr3425 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr3425" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr3425Predicted protein (394 aa)    
Predicted Functional Partners:
Phatr15294
Predicted protein (368 aa)
   
   
 
0.824
Phatr19579
Predicted protein (843 aa)
 
 
  0.699
Phatrdraft1812
Predicted protein (609 aa)
 
 
  0.568
Phatr22622
Translation factor GUF1 homolog, mitochondrial; Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one- codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner (693 aa)
   
   
  0.561
Phatr16018
Predicted protein (666 aa)
   
   
  0.561
IscS
Precursor of desulfurase cysteine desulfurase IscS (400 aa)
         
  0.533
CsdB
Selenocysteine lyase (386 aa)
         
  0.533
PheRS
Phenylalanyl-trna synthetase class IIc family protein (405 aa)
   
   
  0.515
Phatr47067
Predicted protein (1237 aa)
   
   
  0.506
Phatr18087
Adenylosuccinate lyase (499 aa)
         
  0.432
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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