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STRINGSTRING
Phatr34307 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr34307" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr34307Predicted protein (344 aa)    
Predicted Functional Partners:
Phatr45504
Predicted protein (373 aa)
   
          0.441
Phatr30578
Predicted protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family (352 aa)
   
          0.441
Phatr44719
Predicted protein (365 aa)
   
          0.440
Phatr10567
Predicted protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family (284 aa)
   
          0.440
Phatr43164
Predicted protein (298 aa)
   
          0.439
Phatr35460
Predicted protein (301 aa)
   
          0.437
Phatr43764
Predicted protein (365 aa)
   
          0.436
Phatr15297
Predicted protein (146 aa)
   
          0.434
Phatr4266
Predicted protein (260 aa)
   
          0.430
Phatr11116
Predicted protein (142 aa)
   
          0.414
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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