STRINGSTRING
Phatr34538 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr34538" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr34538Predicted protein (320 aa)    
Predicted Functional Partners:
Phatr42307
Predicted protein (453 aa)
     
  0.998
Phatrdraft358
Predicted protein (171 aa)
     
  0.997
Phatr14255
Predicted protein (326 aa)
     
  0.994
Phatr27282
Predicted protein (171 aa)
     
  0.989
Phatr46320
Predicted protein; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome (1022 aa)
     
  0.986
Phatr10674
Predicted protein (290 aa)
     
  0.986
Phatr46656
Predicted protein (531 aa)
     
  0.985
Phatr21290
Predicted protein (385 aa)
     
  0.985
Phatr47039
Predicted protein (413 aa)
     
  0.979
Phatr26975
Predicted protein; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome (701 aa)
     
  0.978
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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