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CPF2 protein (Phaeodactylum tricornutum) - STRING interaction network
"CPF2" - Cry-dash from the cryptochrome/photolyase family in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPF2Cry-dash from the cryptochrome/photolyase family (610 aa)    
Predicted Functional Partners:
Phatr7026
Predicted protein (102 aa)
       
  0.644
Phatr51110
Predicted protein (428 aa)
       
  0.644
CK1
Predicted protein (310 aa)
       
  0.644
Phatr21821
Predicted protein (311 aa)
       
  0.644
TIM_2
Timeless (944 aa)
       
  0.567
Phatr29633
Predicted protein (949 aa)
         
  0.532
ACL
Atp-citrate synthase (1082 aa)
   
   
  0.490
Phatr31367
Predicted protein (819 aa)
   
   
  0.444
SKP3
Sensor kinase protein 3 (1017 aa)
         
  0.434
Phatr12107
Predicted protein (460 aa)
         
  0.422
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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