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Phatr34716 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr34716" - Nad-dependent epimerase/dehydratase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr34716Nad-dependent epimerase/dehydratase (397 aa)    
Predicted Functional Partners:
Phatr46656
Predicted protein (531 aa)
   
 
  0.691
Phatr46479
Translation initiation factor eif-2bgamma (758 aa)
   
 
  0.691
GMD1
Gdp-mannose 4,6-dehydratase (363 aa)
   
0.634
UGDH1
UDP-glucose 6-dehydrogenase (475 aa)
   
 
  0.623
Phatr47245
Predicted protein (480 aa)
   
 
  0.606
Phatr45980
Predicted protein (348 aa)
   
 
  0.606
Phatr45712
Predicted protein (480 aa)
   
 
  0.606
Phatr34317
Dolichol phosphate glucosyltransferase (320 aa)
   
 
  0.606
DPM1
Dolichyl-phosphate mannosyltransferase (236 aa)
   
 
  0.606
SQD1
UDP-sulfoquinovose synthase, plastid (456 aa)
     
  0.597
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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