STRINGSTRING
Phatr3527 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr3527" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr3527Predicted protein (233 aa)    
Predicted Functional Partners:
Phatr46071
Predicted protein (180 aa)
   
        0.542
Phatr15980
Predicted protein (119 aa)
   
          0.525
Phatr11792
Predicted protein (278 aa)
   
          0.525
Phatr48122
Predicted protein (366 aa)
   
          0.524
Phatrdraft1025
Tocopherol cyclase (515 aa)
   
        0.523
PsbO
Oxygen-evolving enhancer protein 1 (308 aa)
   
          0.523
Phatr48524
Predicted protein (300 aa)
   
          0.513
Phatr41220
Predicted protein (420 aa)
   
          0.512
Phatr37959
Predicted protein (311 aa)
   
          0.512
Phatr13895
Predicted protein (330 aa)
   
          0.511
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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