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STRINGSTRING
Phatr3527 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr3527" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr3527Predicted protein (233 aa)    
Predicted Functional Partners:
Phatr19647
Predicted protein (354 aa)
     
 
  0.745
Phatr14145
Predicted protein (516 aa)
     
 
  0.737
Phatr45356
Predicted protein (479 aa)
     
 
  0.722
Phatr45828
Predicted protein (805 aa)
     
 
  0.707
Phatr8777
Predicted protein (110 aa)
     
 
  0.686
Phatr43574
Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (499 aa)
     
 
  0.684
Phatr16814
Predicted protein (662 aa)
     
 
  0.679
Phatr43447
Predicted protein (671 aa)
     
 
  0.667
Phatr13281
60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly (181 aa)
     
 
  0.662
Phatr22868
Predicted protein (551 aa)
     
 
  0.649
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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