STRINGSTRING
Phatr35638 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr35638" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr35638Predicted protein (410 aa)    
Predicted Functional Partners:
Phatr45701
Predicted protein (444 aa)
   
 
  0.608
Phatr12989
Predicted protein (363 aa)
   
 
  0.608
Phatr42437
Predicted protein (428 aa)
   
 
  0.471
Phatr38005
Predicted protein (1005 aa)
   
 
  0.471
NRPS
Non ribosomal peptide synthase (1367 aa)
           
  0.431
GAPN
Glyceraldehyde-3-phosphate dehydrogenase (588 aa)
   
 
  0.429
Phatr31906
Aldehyde dehydrogenase (551 aa)
   
 
  0.429
SSDH
Succinate semialdehyde dehydrogenase (471 aa)
   
 
  0.429
SSD1
Succinate semialdehyde dehydrogenase (533 aa)
   
 
  0.429
Phatr20445
Predicted protein (524 aa)
   
 
  0.429
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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