STRINGSTRING
Phatr35813 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr35813" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr35813Predicted protein (277 aa)    
Predicted Functional Partners:
PheRS
Phenylalanyl-trna synthetase class IIc family protein (405 aa)
   
 
  0.888
Phatr51120
Predicted protein (777 aa)
   
 
  0.801
Phatr11088
Predicted protein (1086 aa)
   
 
  0.801
Phatr27709
Predicted protein (640 aa)
   
 
  0.743
Phatr29824
Predicted protein (1177 aa)
   
 
  0.719
Phatr17198
Predicted protein (1052 aa)
   
 
  0.719
Phatr22113
Bifunctional aspartokinase (870 aa)
   
   
  0.664
CPS-II
Predicted protein (1542 aa)
   
 
  0.630
Phatr24195
CPS III, carbamoyl-phosphate synthase mitochindrial (1463 aa)
   
 
  0.630
Phatr27735
Predicted protein (538 aa)
   
   
  0.626
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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