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VDL1 protein (Phaeodactylum tricornutum) - STRING interaction network
"VDL1" - Precursor of protein violaxanthin deepoxidase-like protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VDL1Precursor of protein violaxanthin deepoxidase-like protein (408 aa)    
Predicted Functional Partners:
PDS2
Phytoene desaturase (589 aa)
           
  0.479
LCYB
Precursor of cyclase lycopene beta cyclase (261 aa)
           
  0.477
PSY
Phytoene synthase (309 aa)
           
  0.470
ZDS
Zeta-carotene desaturase (495 aa)
           
  0.455
ZEP3
Zeaxanthin epoxidase (391 aa)
           
  0.426
RNAse-H
Predicted protein (190 aa)
           
  0.420
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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