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Phatr36226 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr36226" - 60S ribosomal protein L18a in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr3622660S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family (183 aa)    
Predicted Functional Partners:
Phatr25714
Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family (205 aa)
     
 
  0.999
Phatr27125
Predicted protein (115 aa)
   
 
  0.999
Phatr47804
Predicted protein (94 aa)
   
 
  0.999
Phatr19025
Predicted protein (205 aa)
     
 
  0.999
Phatr17414
40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family (205 aa)
     
 
  0.999
Phatr25577
Predicted protein (133 aa)
     
 
  0.999
Phatr23687
Predicted protein (106 aa)
     
 
  0.999
Phatr9199
Predicted protein; Belongs to the universal ribosomal protein uS15 family (151 aa)
     
 
  0.999
Phatr23079
Predicted protein (259 aa)
     
 
  0.999
Phatr34146
60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family (199 aa)
     
 
  0.999
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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