STRINGSTRING
Phatr36284 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr36284" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr36284Predicted protein (924 aa)    
Predicted Functional Partners:
SMC
Predicted protein (1271 aa)
     
  0.994
Phatr48922
Predicted protein (965 aa)
     
  0.993
SMC2
Predicted protein (1213 aa)
     
  0.993
Phatr44165
Predicted protein (1356 aa)
     
  0.993
Phatr52174
DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1143 aa)
     
 
  0.894
Phatr13581
DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1165 aa)
     
 
  0.894
SMC1
Predicted protein (1237 aa)
     
  0.870
SMC3
Predicted protein (1232 aa)
     
  0.868
SMC5
Predicted protein (1099 aa)
     
  0.865
SMC6
Predicted protein (220 aa)
     
  0.862
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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