STRINGSTRING
Phatr36347 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr36347" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr36347Predicted protein (411 aa)    
Predicted Functional Partners:
HemA
Glutamyl-tRNA reductase (512 aa)
 
 
  0.994
Phatr41746
Delta-aminolevulinic acid dehydratase (345 aa)
 
 
  0.988
hemC
Hydroxymethylbilane synthase (329 aa)
 
   
  0.817
Phatr12925
Predicted protein (255 aa)
 
 
 
  0.747
Phatr47293
Predicted protein (580 aa)
         
  0.718
Phatr33017
Predicted protein; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg- protoporphyrin IX (711 aa)
     
   
  0.697
GltX
Ferredoxin-dependent glutamate synthase, fusion of large and small subunits (1591 aa)
   
   
  0.690
Phatr24739
Predicted protein (1594 aa)
   
   
  0.690
PHATR_3140
Predicted protein (196 aa)
         
  0.689
HemE_1
Uroporphyrinogen decarboxylase (431 aa)
   
   
  0.657
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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