STRINGSTRING
Phatr36847 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr36847" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr36847Predicted protein (111 aa)    
Predicted Functional Partners:
ERCC2
Xeroderma pigmentosum group D complementing protein (782 aa)
       
  0.979
Phatr20574
Predicted protein (720 aa)
       
  0.978
Phatr24922
Predicted protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (111 aa)
     
    0.972
Phatr10148
Predicted protein (129 aa)
       
    0.970
RNAP-II_3
Predicted protein (181 aa)
       
    0.969
Phatr44108
Predicted protein (358 aa)
       
  0.967
TFIIH-p44
Suppressor of stem-loop protein 1 (413 aa)
       
  0.964
Phatr47430
Predicted protein (125 aa)
     
    0.963
Phatr25420
Predicted protein (228 aa)
       
    0.961
Phatr13566
Predicted protein (320 aa)
       
    0.961
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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