STRINGSTRING
Phatr36955 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr36955" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr36955Predicted protein (132 aa)    
Predicted Functional Partners:
Phatr9446
Predicted protein (220 aa)
     
 
  0.963
Phatr42302
Predicted protein (289 aa)
     
 
  0.901
Phatr5532
Predicted protein (238 aa)
       
  0.886
Phatr45681
Predicted protein (591 aa)
       
  0.849
Phatr50510
Predicted protein (647 aa)
       
  0.677
Phatr29793
Predicted protein (424 aa)
       
  0.677
Phatr13281
Predicted protein; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly (181 aa)
     
        0.634
Phatr50235
Predicted protein (292 aa)
     
 
  0.623
Phatr47578
Predicted protein (333 aa)
     
 
  0.623
Phatr46056
Predicted protein (612 aa)
     
 
  0.623
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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