STRINGSTRING
Phatr3787 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr3787" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr3787Predicted protein (333 aa)    
Predicted Functional Partners:
Phatr29702
Predicted protein (878 aa)
   
 
  0.975
Phatr35101
Predicted protein (570 aa)
   
 
  0.963
Phatr49522
5-hydroxyisourate hydrolase (299 aa)
 
   
  0.660
Phatr29736
Uricase (247 aa)
 
   
  0.621
Phatr40052
Predicted protein (377 aa)
 
        0.518
Phatr15968
Predicted protein (1387 aa)
              0.499
ACC2
Biotin carboxylase (2282 aa)
     
   
  0.471
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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