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Phatr38165 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr38165" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr38165Predicted protein (232 aa)    
Predicted Functional Partners:
Phatr7173
6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin (143 aa)
  0.995
Phatr6454
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate (194 aa)
 
  0.980
RFK
Riboflavin kinase (150 aa)
     
  0.952
Phatr12172
Predicted protein (153 aa)
     
  0.952
Phatr10882
Predicted protein (148 aa)
 
  0.942
Phatr33427
Predicted protein (386 aa)
 
  0.835
Phatr47432
Predicted protein (281 aa)
 
  0.770
Phatr46623
Predicted protein (693 aa)
   
  0.679
Phatr42619
Predicted protein (494 aa)
   
 
  0.639
PHATR_3140
Predicted protein (196 aa)
   
   
  0.487
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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