STRINGSTRING
Phatr38448 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr38448" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr38448Predicted protein (153 aa)    
Predicted Functional Partners:
TPI/GapC3
Triosephosphate isomerase/glyceraldehyde-3-phosphate dehydrogenase (614 aa)
   
 
  0.537
Phatr44775
Predicted protein (580 aa)
         
  0.533
Phatr19513
Predicted protein (717 aa)
         
  0.533
Phatr27735
Predicted protein (538 aa)
   
   
  0.477
Phatr43016
Predicted protein (1066 aa)
     
 
  0.474
Phatr21513
Predicted protein (1035 aa)
     
 
  0.474
Phatr29702
Predicted protein (878 aa)
           
  0.465
ACL
Atp-citrate synthase (1082 aa)
   
   
  0.464
Phatr31718
Inosine-5’-monophosphate dehydrogenase (468 aa)
   
   
  0.460
Phatr11174
Predicted protein (627 aa)
     
   
  0.452
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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