STRINGSTRING
Phatr38509 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr38509" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr38509Predicted protein (301 aa)    
Predicted Functional Partners:
OAT
Ornithine aminotransferase (448 aa)
 
  0.992
ODC2
Ornithine decarboxylase (390 aa)
       
  0.971
Phatr30514
Predicted protein (351 aa)
   
  0.961
Phatr29702
Predicted protein (878 aa)
       
  0.954
Phatr35643
Predicted protein (337 aa)
       
  0.941
Phatr15083
Predicted protein (374 aa)
       
  0.923
Phatr34526
Predicted protein (440 aa)
         
  0.915
Phatr50577
Acetylornithine aminotransferase (476 aa)
 
  0.819
Phatr55177
Spermine/spermidine synthase (299 aa)
       
  0.803
Phatr13386
Spermine/spermidine synthase (275 aa)
       
  0.803
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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